swath_ms

Curated during INTERVAL pilot study.

datasets

internal

It aggregates protein panel data and metadata for protein quantitative
trait locus (pQTL) analysis using 'pQTLtools' (<https://jinghuazhao.github.io/pQTLtools/>).
The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/>)
and 'SomaScan' (<https://somalogic.com/>), as well as mass spectrometry-based panels from
'CellCarta' (<https://cellcarta.com/>) and 'Seer' (<https://seer.bio/>). The metadata
encompasses updated annotations and publication details.

Jing Zhao

pQTLdata

A Collection of Proteome Panels and Meta-Data

Jing Hua Zhao

Uwe Ligges

Benjamin Altmann

swath_ms function

A data frame with 684 rows and 5 variables:<dl>
<dt><code>Accession</code></dt>
<dd>UniProt id</dd><dt><code>accList</code></dt>
<dd>List of UniProt ids</dd><dt><code>uniprotName</code></dt>
<dd>Protein</dd><dt><code>ensGene</code></dt>
<dd>ENSEMBL gene</dd><dt><code>geneName</code></dt>
<dd>HGNC symbol</dd>
</dl>

Format

SWATH-MS panel — swath_ms

A data frame with 684 rows and 5 variables:<dl>
<dt><code>Accession</code></dt>
<dd>UniProt id</dd>

<dt><code>accList</code></dt>
<dd>List of UniProt ids</dd>

<dt><code>uniprotName</code></dt>
<dd>Protein</dd>

<dt><code>ensGene</code></dt>
<dd>ENSEMBL gene</dd>

<dt><code>geneName</code></dt>
<dd>HGNC symbol</dd>


</dl>

swath_ms: SWATH-MS panel

Description

Usage

Arguments

Format

Details