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pSI (version 1.1)

Specificity Index Statistic

Description

This package contains functions to calculate the Specificity Index statistic, which can be used for comparative quantitative analysis to identify genes enriched in specific cell populations across a large number of profiles, as well as perform numerous post-processing operations. NOTE:Supplementary data (human & mouse expression sets, calculated pSI datasets, etc.) can be found in pSI.data package located at the following URL: http://genetics.wustl.edu/jdlab/psi_package/

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Version

Install

install.packages('pSI')

Monthly Downloads

27

Version

1.1

License

GPL (>= 2)

Maintainer

Last Published

January 30th, 2014

Functions in pSI (1.1)

fisher.iteration

Fisher's Exact Test Across All Cell Types & pSI Thresholds
pSI.count

Convert pSI output to gene count list
dataset.s1

Supplementary Data Set 1
pSI-package

Specificity Index Statistic
candidate.genes

Candidate Gene Lists
candidate.overlap

Candidate Gene Overlap
specificity.index

Specificity Index Statistic
pSI.list

Convert pSI output to gene list
sample.data

Sample Input & Output pSI Data Sets