packDAMipd (version 0.2.0)

predict_coxph: Predict risk/hazard function for cox ph regression

Description

Predict risk/hazard function for cox ph regression

Usage

predict_coxph(
  coxfit,
  dataset,
  param_to_be_estimated,
  covariates,
  indep_var,
  timevar_survival
)

Arguments

coxfit

cox regression fit result

dataset

param describing the methods

param_to_be_estimated

parameter to be estimated

covariates

covariates

indep_var

independent variable

timevar_survival

time variable

Value

plot and the survival function values

Details

"risk" option for "type" returns the hazard ratio relative to mean e.g given below For lung data with data_for_survival <- survival::lung fit <- use_coxph_survival("status", data_for_survival, "sex", covariates = c("ph.ecog"), "time") coeffit = fit$coefficients r1234 <- exp(coeffit("sex")lung$sex+ coeffit("ph.ecog")lung$ph.ecog) rMean <- exp(sum(coef(fit) * fit$means, na.rm=TRUE)) rr <- r1234/rMean

Examples

# NOT RUN {
data_for_survival <- survival::lung
surv_estimated <- use_coxph_survival("status", data_for_survival,
"sex",covariates = c("ph.ecog"), "time")
predict_coxph(surv_estimated$fit,data_for_survival, "status","sex",
covariates = c("ph.ecog"), "time")
# }