pairwiseCI (version 0.1-27)

pairwiseMEP: Wrapper to compute confidence intervals for multiple endpoints

Description

This is a test version! Computes confidence intervals for pair wise comparisons of groups (assuming independent observations) for multiple endpoints. The methods available in pairwiseCI for continuous and count data can be called. Methods for binary data are currently not available. NOTE: Although multiple endpoints and multiple group wise comparisons are considered, there is no adjustment for multiplicity implemented in this function!

Usage

pairwiseMEP(x, ...)
# S3 method for data.frame
pairwiseMEP(x, ep, f,
 control = NULL, conf.level = 0.95, 
 alternative = c("two.sided", "less", "greater"), 
 method = "Param.diff", ...)

Arguments

x

a data.frame

ep

a vector of character strings, naming the variables in x which are the response variables (endpoints) of interest

f

a single character string, naming a factor variable in data which splits the dataset into treatment groups

control

optionally, a single character string, naming a factor level in variable f, which shall be considered as control group; if omitted (default) all pairwise comparisons are computed

conf.level

a single numeric between 0.5 and 1, specifying the local confidence level of the single confidence intervals

alternative

a single character string, one of 'two.sided', 'less', 'greater'

method

a vector of character strings, specifying the method for computation of the confidence intervals, see pairwiseCImethodsCont and pairwiseCImethodsCount for possible options; must have length 1 or the same length as ep!

…

further arguments to be passed to pairwiseCI, options are listed in pairwiseCImethodsCont and pairwiseCImethodsCount

Value

conf.int

a list with one element for each element in ep, containing the estimates, lower and upper limits and the comparison names and by levels in the format of a data.frame

data

as input x

ep

as input

f

as input

control

as input

conf.level

as input

alternative

as input

method

as input

Details

Calls pairwiseCI.

See Also

The result can be plotted: plotCI.pairwiseMEP, and coerced to a data.frame: as.data.frame.pairwiseMEP

Examples

# NOT RUN {
x1<-rnorm(80,100,8)
x2<-rnbinom(80,mu=10, size=10)
A<-rep(c("a1","a2"), c(40,40))
B<-rep(rep(c("b1","b2"), c(20,20)), times=2)
dat<-data.frame(x1=x1,x2=x2,A=A, B=B)

test<-pairwiseMEP(x=dat, ep=c("x1","x2"), control="a1",
 f="A", by="B", method=c("Param.ratio","Negbin.ratio"))
test


plotCI(test, whichep=c("x1","x2"))

as.data.frame(test, whichep=c(1,2))

as.data.frame(test, whichep=c("x1","x2"))


# }