coverage_plot

A simple diagnostic plot showing the coverage of fossil taxa in
modern calibration set

Several tests of quantitative palaeoenvironmental reconstructions
from microfossil assemblages, including the null model tests of the
statistically significant of reconstructions developed by Telford and Birks
(2011) <doi:10.1016/j.quascirev.2011.03.002>, and tests of the effect of
spatial autocorrelation on transfer function model performance using methods
from Telford and Birks (2009) <doi:10.1016/j.quascirev.2008.12.020> and
Trachsel and Telford (2016) <doi:10.5194/cp-12-1215-2016>. Age-depth models with
generalized mixed-effect regression from Heegaard et al (2005)
<doi:10.1191/0959683605hl836rr> are also included.

Richard Telford

palaeoSig

Significance Tests for Palaeoenvironmental Reconstructions

Mathias Trachsel

coverage_plot function

<dl><dt>spp</dt>
<dd>data.frame of modern species abundances</dd>
<dt>fos</dt>
<dd>data.frame of fossil species abundances</dd>
<dt>n2_rare</dt>
<dd>numeric value of Hill's N2 below which species are
highlighted as rare</dd>
<dt>label</dt>
<dd>numeric label taxa where maximum fossil abundance -
maximum modern abundance &gt; label.
Defaults to NULL which does not add labels</dd></dl>

Arguments

coverage_plot — coverage_plot

<dl>

<dt>spp</dt>
<dd>data.frame of modern species abundances</dd>


<dt>fos</dt>
<dd>data.frame of fossil species abundances</dd>


<dt>n2_rare</dt>
<dd>numeric value of Hill's N2 below which species are
highlighted as rare</dd>


<dt>label</dt>
<dd>numeric label taxa where maximum fossil abundance -
maximum modern abundance &gt; label.
Defaults to NULL which does not add labels</dd>

</dl>

coverage_plot: coverage_plot

Description

Usage

Value

Arguments

Details

Examples