
A function to plot the FDR curve the nearest shrunken centroid classifier
pamr.plotfdr(fdrfit, call.win.metafile = FALSE)
The result of a call to pamr.fdr
Used by Excel interface
Trevor Hastie,Robert Tibshirani, Balasubramanian Narasimhan, and Gilbert Chu
pamr.plotfdr
plots the FDR curves from nearest shrunken centroid
classifier. The median FDR (solid line) and upper 90 percentile (broken
line) are shown
suppressWarnings(RNGversion("3.5.0"))
set.seed(120)
x <- matrix(rnorm(1000*20),ncol=20)
y <- sample(c(1:2),size=20,replace=TRUE)
x[1:50,y==2]=x[1:50,y==2]+3
mydata <- list(x=x,y=y)
mytrain <- pamr.train(mydata)
myfdr <- pamr.fdr(mytrain, mydata)
pamr.plotfdr(myfdr)
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