RA_exp_mat

<p>A matrix containing the log2-normalized expression values of the differentially-expressed genes
for 18 rheumatoid arthritis (RA) patients and 15 healthy subjects. Expression values of
differentially-expressed genes with adj.P.Val &lt;= 0.05 are presented in this dataset.</p>

datasets

Pathway enrichment analysis enables researchers to uncover mechanisms
underlying the phenotype. pathfindR is a tool for pathway enrichment analysis
utilizing active subnetworks. It identifies active subnetworks in a
protein-protein interaction network using user-provided a list of genes.
It performs pathway enrichment analyses on the identified subnetworks.
pathfindR also offers functionalities to cluster enriched pathways and identify
representative pathways and to score the pathways per sample. The method is
described in detail in Ulgen E, Ozisik O, Sezerman OU. 2018. pathfindR: An R
Package for Pathway Enrichment Analysis Utilizing Active Subnetworks. bioRxiv.
<doi:10.1101/272450>.

Ege Ulgen

pathfindR

Pathway Enrichment Analysis Utilizing Active Subnetworks

RA_exp_mat function

<p>A matrix with 572 rows and 33 columns.</p>

RA_exp_mat: Example Input for pathfindR - pathway z-scores

Description

Usage

Arguments

Format