custom_result

<p>A data frame consisting of pathfindR enrichment results on the example TF target data.</p>

datasets

Pathway enrichment analysis enables researchers to uncover mechanisms
underlying the phenotype. pathfindR is a tool for pathway enrichment analysis
utilizing active subnetworks. It identifies active subnetworks in a
protein-protein interaction network using user-provided a list of genes.
It performs pathway enrichment analyses on the identified subnetworks.
pathfindR also offers functionalities to cluster enriched pathways and identify
representative pathways and to score the pathways per sample. The method is
described in detail in Ulgen E, Ozisik O, Sezerman OU. 2018. pathfindR: An R
Package for Pathway Enrichment Analysis Utilizing Active Subnetworks. bioRxiv.
<doi:10.1101/272450>.

Ege Ulgen

pathfindR

Pathway Enrichment Analysis Utilizing Active Subnetworks

custom_result function

<p>data frame containing 2 rows and 8 columns. Each row is a gene set (the TF target gene sets).</p>

custom_result: Custom Gene Set Enrichment Results

Description

Usage

Arguments

Format