pathfindR (version 1.3.0)

input_testing: Input Testing

Description

Input Testing

Usage

input_testing(input, p_val_threshold, org_dir = NULL)

Arguments

input

the input data that pathfindR uses. The input must be a data frame with three columns:

1. Gene Symbol (HGNC Gene Symbol)

2. Change value, e.g. log(fold change) (Not obligatory)

3. adjusted p value associated with test, e.g. differential expression/methylation

p_val_threshold

the adjusted-p value threshold to use when filtering the input data frame. Must a numeric value between 0 and 1.

org_dir

path/to/original/directory, supplied by run_pathfindR (default = NULL)

Value

Only checks if the input and the threshold follows the required specifications.

See Also

See run_pathfindR for the wrapper function of the pathfindR workflow

Examples

# NOT RUN {
input_testing(RA_input, 0.05)
# }