kegg_genes

<p>A list containing the genes involved in each human KEGG pathway. Each element
is a vector of gene symbols located in the given pathway. Names correspond to
the KEGG ID of the pathway. Pathways that did not contain any genes were
discarded. This data was retrieved on Nov 9, 2018.</p>

datasets

Pathway enrichment analysis enables researchers to uncover mechanisms
underlying the phenotype. pathfindR is a tool for pathway enrichment analysis
utilizing active subnetworks. It identifies active subnetworks in a
protein-protein interaction network using user-provided a list of genes.
It performs pathway enrichment analyses on the identified subnetworks.
pathfindR also offers functionalities to cluster enriched pathways and identify
representative pathways and to score the pathways per sample. The method is
described in detail in Ulgen E, Ozisik O, Sezerman OU. 2018. pathfindR: An R
Package for Pathway Enrichment Analysis Utilizing Active Subnetworks. bioRxiv.
<doi:10.1101/272450>.

Ege Ulgen

pathfindR

Pathway Enrichment Analysis Utilizing Active Subnetworks

kegg_genes function

<p>list containing 321 vectors of gene symbols. Each vector corresponds
  to a pathway.</p>

kegg_genes: KEGG Gene Sets

Description

Usage

Arguments

Format