reactome_genes

<p>A list containing the genes involved in each human Reactome pathway. Each
element is a vector of gene symbols located in the given pathway. Names
correspond to the Reactome ID of the pathway. This data was retrieved on Nov 9,
2018.</p>

datasets

Pathway enrichment analysis enables researchers to uncover mechanisms
underlying the phenotype. pathfindR is a tool for pathway enrichment analysis
utilizing active subnetworks. It identifies active subnetworks in a
protein-protein interaction network using user-provided a list of genes.
It performs pathway enrichment analyses on the identified subnetworks.
pathfindR also offers functionalities to cluster enriched pathways and identify
representative pathways and to score the pathways per sample. The method is
described in detail in Ulgen E, Ozisik O, Sezerman OU. 2018. pathfindR: An R
Package for Pathway Enrichment Analysis Utilizing Active Subnetworks. bioRxiv.
<doi:10.1101/272450>.

Ege Ulgen

pathfindR

Pathway Enrichment Analysis Utilizing Active Subnetworks

reactome_genes function

<p>list containing 2051 vectors of gene symbols. Each vector corresponds
  to a pathway.</p>

reactome_genes: Reactome Gene Sets

Description

Usage

Arguments

Format