pavian (version 1.0.0)

get_nreads: Get number of aligned reads from a bam file

Description

Get number of aligned reads from a bam file

Usage

get_nreads(bam_file, min_mapq = 0)

Arguments

bam_file

character(1) or BamFile; BAM file path.

min_mapq

Minimum mapping quality

Value

Number of reads for each sequence.