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pcot2 (version 1.40.0)

Principal Coordinates and Hotelling's T-Square method

Description

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

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Version

Version

1.40.0

License

GPL (>= 2)

Maintainer

Sarah Song

Last Published

February 15th, 2017

Functions in pcot2 (1.40.0)

pcot2-internal

Internal PCOT2 functions
corplot2

Produce a plot for jointly visualizing unpooled correlation information and expression data for selected genes
aveProbe

Transform Affymetrix data so that unique genes with multiple probes are represented by a single expression value on each array.
getImat

Generate an indicator matrix
corplot

Produce a plot for jointly visualizing pooled correlation information and expression data for selected genes
pcot2

Principal Coordinates and Hotelling's T-Square