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pedigree (version 1.4.2)

Pedigree Functions

Description

Pedigree related functions.

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Version

Install

install.packages('pedigree')

Monthly Downloads

1,038

Version

1.4.2

License

GPL (>= 2)

Maintainer

Albart Coster

Last Published

August 13th, 2022

Functions in pedigree (1.4.2)

countOff

Function that counts the number of offspring (and following generations for each individual in a pedigree.
pedigree-package

Package to deal with pedigree data
trimPed

Function to trim a pedigree based on available data
calcInbreeding

Calculates inbreeding coefficients for individuals in a pedigree.
gblup

Function to calculate breeding values using an animal model and a relationship matrix calculated from the markers (G matrix)
blup

Function to calculate breeding values using an animal model
makeAinv

Makes inverted A matrix for a pedigree
orderPed

Orders a pedigree
countGen

Count generation number for each individual in a pedigree.
makeA

Makes the A matrix for a part of a pedigree
add.Inds

Function to add missing individuals to a pedigree
calcG

Function to calculate a relationship matrix from marker data (usually allele count data), G matrix.