mendelianCheck

Check marker data for Mendelian inconsistencies

A comprehensive collection of tools for creating,
manipulating and visualising pedigrees and genetic marker data.
Pedigrees can be read from text files or created on the fly with
built-in functions. A range of utilities enable modifications like
adding or removing individuals, breaking loops, and merging pedigrees.
An online tool for creating pedigrees interactively, based on
'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>.
'pedtools' is the hub of the 'pedsuite', a collection of packages for
pedigree analysis. A detailed presentation of the 'pedsuite' is given
in the book 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).

Magnus Vigeland

pedtools

Creating and Working with Pedigrees and Marker Data

Magnus Dehli Vigeland

mendelianCheck function

<dl><dt>x</dt>
<dd>a <code>ped()</code> object</dd>
<dt>remove</dt>
<dd>a logical. If FALSE, the function returns the indices of
markers found to incorrect. If TRUE, a new <code>ped</code> object is
returned, where the incorrect markers have been deleted.</dd>
<dt>verbose</dt>
<dd>a logical. If TRUE, details of the markers failing the tests
are shown.</dd></dl>

Arguments

Author

Check for Mendelian errors — mendelianCheck

<dl>

<dt>x</dt>
<dd>a <code>ped()</code> object</dd>


<dt>remove</dt>
<dd>a logical. If FALSE, the function returns the indices of
markers found to incorrect. If TRUE, a new <code>ped</code> object is
returned, where the incorrect markers have been deleted.</dd>


<dt>verbose</dt>
<dd>a logical. If TRUE, details of the markers failing the tests
are shown.</dd>

</dl>

mendelianCheck: Check for Mendelian errors

Description

Usage

Value

Arguments

Author

Examples