newPed

This is the internal constructor of <code>ped</code> objects. It does not do any
validation of input other than simple type checking. In particular it should
only be used in programming scenarios where it is known that the input is a
valid, connected pedigree. End users are recommended to use the regular
constructor <code>ped()</code>.

A comprehensive collection of tools for creating,
manipulating and visualising pedigrees and genetic marker data.
Pedigrees can be read from text files or created on the fly with
built-in functions. A range of utilities enable modifications like
adding or removing individuals, breaking loops, and merging pedigrees.
An online tool for creating pedigrees interactively, based on
'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>.
'pedtools' is the hub of the 'pedsuite', a collection of packages for
pedigree analysis. A detailed presentation of the 'pedsuite' is given
in the book 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).

Magnus Vigeland

pedtools

Creating and Working with Pedigrees and Marker Data

Magnus Dehli Vigeland

newPed function

<dl><dt>ID</dt>
<dd>A character vector.</dd>
<dt>FIDX</dt>
<dd>An integer vector.</dd>
<dt>MIDX</dt>
<dd>An integer vector.</dd>
<dt>SEX</dt>
<dd>An integer vector.</dd>
<dt>FAMID</dt>
<dd>A string.</dd>
<dt>detectLoops</dt>
<dd>A logical.</dd></dl>

Arguments

Internal ped constructor — newPed

<dl>

<dt>ID</dt>
<dd>A character vector.</dd>


<dt>FIDX</dt>
<dd>An integer vector.</dd>


<dt>MIDX</dt>
<dd>An integer vector.</dd>


<dt>SEX</dt>
<dd>An integer vector.</dd>


<dt>FAMID</dt>
<dd>A string.</dd>


<dt>detectLoops</dt>
<dd>A logical.</dd>

</dl>

newPed: Internal ped constructor

Description

Usage

Value

Arguments

Details

Examples