R2.test

This function computes Ramos-Onsins and Rozas's test of neutrality
 for a set of DNA sequences.

htest

Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.

Emmanuel Paradis

pegas

Population and Evolutionary Genetics Analysis System

Thibaut Jombart

Zhian N. Kamvar

Brian Knaus

Klaus Schliep

Alastair Potts

David Winter

R2.test function

<dl> <dt>x</dt>
<dd>a DNA matrix (object of class <code>"DNAbin"</code>).</dd> <dt>B</dt>
<dd>the number of replicates used for the simulation procedure.</dd> <dt>theta</dt>
<dd>the value of the \(\theta\) population parameter
 used in the simulation.</dd> <dt>plot</dt>
<dd>a logical value specifying whether to plot the results
 (<code>TRUE</code> by default).</dd> <dt>quiet</dt>
<dd>a logical value specifying whether to not display the
 progress of the simulations. The default is <code>FALSE</code> meaning
 that a progress bar is displayed by default.</dd> <dt>...</dt>
<dd>further arguments passed to <code>hist</code>.</dd></dl>

Arguments

Author

Ramos-Onsins--Rozas Test of Neutrality — R2.test

<dl>

 <dt>x</dt>
<dd>a DNA matrix (object of class <code>"DNAbin"</code>).</dd>

 <dt>B</dt>
<dd>the number of replicates used for the simulation procedure.</dd>

 <dt>theta</dt>
<dd>the value of the \(\theta\) population parameter
 used in the simulation.</dd>

 <dt>plot</dt>
<dd>a logical value specifying whether to plot the results
 (<code>TRUE</code> by default).</dd>

 <dt>quiet</dt>
<dd>a logical value specifying whether to not display the
 progress of the simulations. The default is <code>FALSE</code> meaning
 that a progress bar is displayed by default.</dd>

 <dt>...</dt>
<dd>further arguments passed to <code>hist</code>.</dd>

</dl>

Ramos-Onsins--Rozas Test of Neutrality

R2.test: Ramos-Onsins--Rozas Test of Neutrality

Description

Usage

Value

Arguments

Author

References

See Also

Examples