pegas-package

pegas

pegas provides functions for the analysis of allelic data and of
 haplotype data from DNA sequences. It requires and complements two
 other R-packages: ape and adegenet.
The complete list of functions can be displayed with
 <code><a href="/link/library(help%20%3D%20pegas)?package=pegas&version=1.3" data-mini-rdoc="pegas::library(help = pegas)">library(help = pegas)</a></code>.
More information on pegas can be found at
 <a href="https://emmanuelparadis.github.io/pegas.html">https://emmanuelparadis.github.io/pegas.html</a>.

package

Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.

Emmanuel Paradis

Population and Evolutionary Genetics Analysis System

Thibaut Jombart

Zhian N. Kamvar

Brian Knaus

Klaus Schliep

Alastair Potts

David Winter

pegas-package function

Emmanuel Paradis, Thibaut Jombart, Zhian N. Kamvar, Brian Knaus,
 Alastair Potts, Klaus Schliep, David Winter
Maintainer: Emmanuel Paradis

Author

pegas provides functions for the analysis of allelic data and of
 haplotype data from DNA sequences. It requires and complements two
 other R-packages: ape and adegenet.
The complete list of functions can be displayed with
 <code><a href='https://rdrr.io/r/base/library.html'>library(help = pegas)</a></code>.
More information on pegas can be found at
 <a href='https://emmanuelparadis.github.io/pegas.html'>https://emmanuelparadis.github.io/pegas.html</a>.

pegas-package: Population and Evolutionary Genetics Analysis System

Description

Arguments

Author