A dataset containing processed information about the first simulated 130 families.
These families are referenced in the vigniette simulation_study_real.Rmd
The user must specify the pedigree
argument as a data frame which contains the
family data (see test_fam
). The family data must be in the correct format with the following columns:
test_fam2
A list of processed family data.
ID
A numeric value representing the unique identifier for each individual. There should be no duplicated entries.
Sex
A numeric value where 0
indicates female and 1
indicates male. Missing entries are not currently supported.
MotherID
A numeric value representing the unique identifier for an individual's mother.
FatherID
A numeric value representing the unique identifier for an individual's father.
isProband
A numeric value where 1
indicates the individual is a proband and 0
otherwise.
CurAge
A numeric value indicating the age of censoring (current age if the person is alive or age at death if the person is deceased). Allowed ages range from 1
to 94
.
isAff
A numeric value indicating the affection status of cancer, with 1
for diagnosed individuals and 0
otherwise. Missing entries are not supported.
Age
A numeric value indicating the age of cancer diagnosis, encoded as NA
if the individual was not diagnosed. Allowed ages range from 1
to 94
.
Geno
A column for germline testing or tumor marker testing results. Positive results should be coded as 1
, negative results as 0
, and unknown results as NA
or left empty.