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peptider (version 0.2.2)

BLOSUM80: BLOSUM80 matrix

Description

The BLOSUM80 matrix, which stands for Blocks Substitution Matrix, defines log-odds scores for the ratio of the chance of two amino acids appearing in a sequence over the chance that the two amino acids appear in any sequence. Larger scores indicate a higher probability of substitutions. This matrix is used in order to compute sequences which are in the neighborhood of other sequences.

Usage

data(BLOSUM80)

Arguments

Details

BLOSUM80 matrix