codons

(vector) of character strings of  peptide sequences.

library scheme under which neighbors are being calculated. this is only of importance, if method="dna"

libscheme

internal use only: Set to true if calling this from another function

flag


use this function for only a few peptide sequences. Any larger number of peptide sequences should be dealt with in the framework of the library scheme and the detect function.


Evaluation of diversity in peptide libraries, including NNN, NNB,
NNK/S, and 20/20 schemes. Custom encoding schemes can also be defined.
Metrics for evaluation include expected coverage, relative efficiency, and
the functional diversity of the library. Peptide-level inclusion
probabilities are computable for both the native and custom encoding
schemes.

codons: Compute the number of codon representations for a (vector of) peptide sequence(s)

Description

Usage

Arguments

Value

Examples