genNeighbors_reduced: Calculate neighborhood distribution
Description
Calculate distribution of neighbors under library scheme lib for peptide sequences of length k.
Usage
genNeighbors_reduced(sch, k)
Arguments
sch
library scheme
k
length of the peptide sequences
Value
dataset of peptide sequences: L are amino acid sequences,
c0 are codons for self representation,
cr is the ratio of #neighbors in first degree neighborhood (not counting self representations) and #codons in self representation
N1 is the number of neighbors in codon representation (including self representation)
s is the number of peptide sequences described by the label
o is the number of peptide sequences reached by permutations