pergola (version 1.0)

plotRf: Plot recombination frequencies

Description

Graphical representation of recombination frequencies to support supervised estimation of the numbers of clusters

Usage

plotRf(rf, plottype = "dendrogram", method = "single", cex.axis = 1, ...)

Arguments

rf

Matrix of pairwise recombination frequencies.

plottype

Default is "dendrogram". Any other value will plot the recombination frequencies.

method

Default is "single", which is used for the hierarchical clustering.

cex.axis

Size of axis labels in image plot.

...

arguments are forwarded to image.

Value

None.

Examples

data(simTetra)
simTetraGen <- bases2genotypes(simTetra, 4)
rfMat <- calcRec(simTetraGen, 4)
plotRf(rfMat)