pergola (version 1.0)

swapChrs: Swap chromosomes

Description

Finds best matching chromosome for each chromosome and brings them into the same order.

Usage

swapChrs(map, comp)

Arguments

map

Map to switch.

comp

Other map for comparison.

Value

map

Examples

data(simTetra)
simTetrageno <- bases2genotypes(simTetra, 4)
rfMat <- calcRec(simTetrageno, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)   
split <- sortLeafs(rfMat, split, method = "endlink")
map2 <- pullMap(rfMat, split = split)   
map <- swapChrs(map, map2)