pergola (version 1.0)

switchChrs: Switch Chromosomes

Description

Wrapper function to switch chromosomes for the whole map

Usage

switchChrs(map, comp)

Arguments

map

Map to switch.

comp

Other map for comparison.

Value

map

Examples

data(simTetra)
simTetrageno <- bases2genotypes(simTetra, 4)
rfMat <- calcRec(simTetrageno, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)   
split <- sortLeafs(rfMat, split, method = "endlink")
map2 <- pullMap(rfMat, split = split)   
map <- switchChrs(map, map2)