Learn R Programming

permPATH (version 1.0)

permPath-package: Permutation Based Gene Expression Pathway Analysis.

Description

Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).

Arguments

Details

Package: permPath
Type: Package
Version: 0.6
Date: 2016-05-13
License: GPL-3

References

B. Efron, R. Tibshirani (2007) On Testing the Significance of Sets of Genes. The Annals of Applied Statistics. Vol. 1, No 1, 107--129.

A. Subramanian, P. Tamayo, V. K. Mootha, S. Mukherjee, B. L. Ebert, M. A. Gillette, A. Paulovich, S. L. Pomeroy, T. R. Golub, E. S. Lander and J. P. Mesirov (2005), Gene Set Enrichment Analysis: A knowledge-based Approach for Interpreting Genome-Wide Expression Profiles. Proc. Natl. Acad. Sci. USA. Vol. 102, No 43, 15545--15550.