
       This data set uses 564 SNP genotype data and CCT8 gene expression data for 60 individuals from CEU population, where CEU stands for "Utah residents with ancestry from northern and western Europe". 
     

datasets

Estimate the false discovery proportion (FDP) by Principal Factor Approximation method with general known and unknown covariance dependence.

Tracy Ke

Estimates False Discovery Proportion Under Arbitrary Covariance
Dependence

CEU function

A list of two objects <code>x</code> and <code>y</code>.
        <ul>
<li> <code>x</code>: A matrix of dimension 60*1128. Each row corresponds to one individual. In row j, every two neighboring columns correspond to one SNP: (0,0) for "no polymorphism", (1,0) for "one nucleotide has polymorphism" and (0,1) for "both nucleotides have polymorphisms".
         </li>
<li> <code>y</code>: A vector of dimension 60. Each element corresponds to the CCT8 gene expression level on one individual.
      </li>
</ul> 

Format

http://pngu/mgh.harvard.edu/purcell/plink/res.shtml ftp:/ftp.sanger.ac.uk/pub/genevar

CEU: CCT8 genome-wise association data on CEU population

Description

Usage

Arguments

Format

Source

References