phangorn-package: Phylogenetic analysis in R
Description
Phylogenetic analysis in R (Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
Distance methods & Hadamard conjugation)
The complete list of functions can be displayed with library(help = phangorn).
Further information is available in two vignettes.
ll{
Trees Constructing phylogenetic trees (source, pdf)
phangorn-specials Advanced features (source, pdf)
Ancestral Ancestral sequence reconstruction (source, pdf)
}
The first vignette (to display type vignette('Trees')) gives an introduction in phylogenetic analysis with phangorn, and
the second vignette covers more advanced feature like defining special character spaces.References
Schliep K.P. (2011) phangorn: Phylogenetic analysis in R.
Bioinformatics, 27(4) 592-593