image.phyDat

This function plots an image of an alignment of sequences.

Allows for estimation of phylogenetic trees and networks
using Maximum Likelihood, Maximum Parsimony, distance methods and
Hadamard conjugation (Schliep 2011). Offers methods for tree comparison,
model selection and visualization of phylogenetic networks as described in
Schliep et al. (2017).

Klaus Schliep

phangorn

Phylogenetic Reconstruction and Analysis

Emmanuel Paradis

Leonardo de Oliveira Martins

Alastair Potts

Iris Bardel-Kahr

Tim W. White

Cyrill Stachniss

Michelle Kendall

Keren Halabi

Richel Bilderbeek

Kristin Winchell

Liam Revell

Mike Gilchrist

Jeremy Beaulieu

Brian O'Meara

Long Qu

Joseph Brown

Santiago Claramunt

image.phyDat function

<dl><dt>x</dt>
<dd>an object containing sequences, an object of class <code>phyDat</code>.</dd>
<dt>...</dt>
<dd>further arguments passed to or from other methods.</dd></dl>

Arguments

Plot of a Sequence Alignment — image.phyDat

<dl>

<dt>x</dt>
<dd>an object containing sequences, an object of class <code>phyDat</code>.</dd>


<dt>...</dt>
<dd>further arguments passed to or from other methods.</dd>

</dl>

Plot of a Sequence Alignment

image.phyDat: Plot of a Sequence Alignment

Description

Usage

Arguments

Details

See Also