phangorn (version 2.12.1)

cladePar: Utility function to plot.phylo

Description

cladePar can help you coloring (choosing edge width/type) of clades.

Usage

cladePar(tree, node, edge.color = "red", tip.color = edge.color,
  edge.width = 1, edge.lty = "solid", x = NULL, plot = FALSE, ...)

Value

A list containing the information about the edges and tips.

Arguments

tree

an object of class phylo.

node

the node which is the common ancestor of the clade.

edge.color

see plot.phylo.

tip.color

see plot.phylo.

edge.width

see plot.phylo.

edge.lty

see plot.phylo.

x

the result of a previous call to cladeInfo.

plot

logical, if TRUE the tree is plotted.

...

Further arguments passed to or from other methods.

Author

Klaus Schliep

See Also

plot.phylo

Examples

tree <- rtree(10)
plot(tree)
nodelabels()
x <- cladePar(tree, 12)
cladePar(tree, 18, "blue", "blue", x=x, plot=TRUE)