as.data.frame.phate

<p>Returns the embedding matrix with column names PHATE1 and PHATE2</p>

PHATE is a tool for visualizing high dimensional single-cell data
with natural progressions or trajectories. PHATE uses a novel conceptual framework
for learning and visualizing the manifold inherent to biological systems in which
smooth transitions mark the progressions of cells from one state to another.
To see how PHATE can be applied to single-cell RNA-seq datasets from hematopoietic
stem cells, human embryonic stem cells, and bone marrow samples, check out our publication in Nature Biotechnology
at <doi:10.1038/s41587-019-0336-3>.

Scott Gigante

phateR

as.data.frame.phate: Convert a PHATE object to a data.frame

Description

Usage

Arguments