createMix

analyseLineVariance

applyFunctionToFile

ascendingMaptoJigSawMap

assignLinkageGroups

checkAndBind

checkForEpistasis

cleanRfs

donothing

getMarkerOffsets

getMarkerOffsetsFromMap

matchMarkers

mlog

mlogit

mprobit

msqrt

map2mapCorrelationMatrix

map2mapImage

mergeInverted

normalModeReading

plot4Nmixture

print.population

readSingleFile

reciproce

rearrangeMarkers

selectByLine

selectPhenotypes

selectChr

simulateParentalPhenotypes

tTestByLine

twoGenosModel

writeSingleFile

add.to.populationSubAnnots.internal

add.to.populationSubGeno.internal

add.to.populationSubMap.internal

add.to.populationSubPheno.internal

bestQTLSub.internal

bestCorelated.internal

bestCorelatedSub.internal

bestQTL.internal

chromosomesLengths.internal

cleanGeno.internal

cleanNames.internal

convertMap.internal

convertType.internal

cross.denovo.internal

doCleanUp.internal

fakeFounders.internal

fakeMixUps.internal

fakePheno.internal

fakePhysicalMap.internal

filterRow.internal

findUsingTTest.internal

fullScanRow.internal

generate.biomarkers.internal

genotypeCheck.internal

genotypesToCross.internal

getChrOffsets.internal

getChromosome.internal

getMarkerOffsets.internal

getPopulationOffsets.internal

getpeaks.internal

getYLocs.internal

inListCheck.internal

inRangeCheck.internal

insertMarkers.internal

invertChromosome.internal

lowerTrng.internal

makeChromPal.internal

makeHaplos.internal

mapMarkers.internal

mergeChromosomes.internal

mergeEnv.internal

numericCheck.internal

printGeno.internal

removeChromosomesSub.internal

scoreMixups.internal

selectTopMarker.internal

splitPheno.internal

splitPhenoRowEM.internal

simBC.internal

switchChromosomes.internal

writeGenotypes.internal

writePhenotypes.internal

selectByLineApply

tTestByLineApply

check.population

defaultCheck.internal

createMix.test

is.integer0

processInteractions

splitPheno.Apply

<p>Internal pheno2geno functions. These are generally not to be called by the user.</p>

internal

phenotypes2genotypes-internal

High-throughput generation of genetic markers from molecular phenotypes for crosses between inbred strains. These markers can be use to saturate existing genetic map or creating a new one.

Konrad Zych

pheno2geno

High-Throughput Generation of Genetic Markers and Maps from
Molecular Phenotypes for Crosses Between Inbred Strains

phenotypes2genotypes-internal function

Internal pheno2geno functions — phenotypes2genotypes-internal

Internal pheno2geno functions

phenotypes2genotypes-internal: Internal pheno2geno functions

Description

Usage

Arguments