phenology (version 10.1)

Tagloss_format: Format a CMR dataset into a file that Tagloss_L can use.

Description

This function formats a CMR dataset to a file that Tagloss_L can use.
The format of data is a data.frame with 4 columns:
ID is the column with the permanent identification code
L is the column with the non-permanent code located at left
R is the column with the non-permanent code located at right
Date is the column with the date of observation
Note that R and L columns can be exchanged if 21 model is used.

Usage

Tagloss_format(
  data,
  model = "21",
  progressbar = TRUE,
  column.Date = "Date",
  column.ID = "ID",
  column.left = "L",
  column.right = "R",
  keeponly2 = TRUE
)

Value

Return the maximum number of days an individual has been observed in a dataset.

Arguments

data

CMR file

model

Can be "21" or "LR"

progressbar

Is a progressbar been shown?

column.Date

Name of the column with Date

column.ID

Name of the column with ID

column.left

Name of the column with left tag

column.right

Name of the column with right tag

keeponly2

If TRUE, keep only individuals tagged with 2 tags

Author

Marc Girondot

Details

Tagloss_format formats a CMR dataset into a file that Tagloss_L can use.

See Also

Other Model of Tag-loss: Tagloss_L(), Tagloss_LengthObs(), Tagloss_cumul(), Tagloss_daymax(), Tagloss_fit(), Tagloss_mcmc(), Tagloss_mcmc_p(), Tagloss_model(), Tagloss_simulate(), logLik.Tagloss(), o_4p_p1p2, plot.Tagloss(), plot.TaglossData()

Examples

if (FALSE) {
library(phenology)
# Example
head(outLR)
data_f_21 <- Tagloss_format(outLR, model="21")
data_f_LR <- Tagloss_format(outLR, model="LR")
}