photobiology (version 0.11.3)

check_spct: Check validity of spectral objects

Description

Check that an R object contains the expected data members.

Usage

check_spct(x, byref, strict.range, force = FALSE, ...)
# S3 method for default
check_spct(x, byref = FALSE, strict.range = NA, force = FALSE, ...)
# S3 method for generic_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = NA,
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for calibration_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for raw_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for cps_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for filter_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for solute_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for reflector_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for object_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for response_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = NA,
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for source_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)
# S3 method for chroma_spct
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

Arguments

x

An R object

byref

logical indicating if new object will be created by reference or by copy of x

strict.range

logical indicating whether off-range values result in an error instead of a warning, NA disables the test.

force

logical If TRUE check is done even if checks are disabled.

...

additional param possible in derived methods

multiple.wl

numeric Maximum number of repeated w.length entries with same value.

Methods (by class)

• check_spct(default): Default for generic function.

• check_spct(generic_spct): Specialization for generic_spct.

• check_spct(calibration_spct): Specialization for calibration_spct.

• check_spct(raw_spct): Specialization for raw_spct.

• check_spct(cps_spct): Specialization for cps_spct.

• check_spct(filter_spct): Specialization for filter_spct.

• check_spct(solute_spct): Specialization for solute_spct.

• check_spct(reflector_spct): Specialization for reflector_spct.

• check_spct(object_spct): Specialization for object_spct.

• check_spct(response_spct): Specialization for response_spct.

• check_spct(source_spct): Specialization for source_spct.

• check_spct(chroma_spct): Specialization for chroma_spct.

See Also

Other data validity check functions: check_spectrum(), check_w.length(), enable_check_spct()

Examples

check_spct(sun.spct)

check_spct(sun.spct)
# try(check_spct(-sun.spct))
# try(check_spct((sun.spct[1, "w.length"] <- 1000)))