photobiologyWavebands-package: photobiologyWavebands: Waveband Definitions for UV, VIS, and IR Radiation
Description
Constructors of waveband objects for commonly used biological spectral weighting functions (BSWFs) and for different wavebands describing named ranges of wavelengths in the ultraviolet (UV), visible (VIS) and infrared (IR) regions of the electromagnetic spectrum. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) tools:::Rd_expr_doi("10.19232/uv4pb.2015.1.14").
Arguments
Author
Maintainer: Pedro J. Aphalo pedro.aphalo@helsinki.fi (ORCID)
Other contributors:
Titta K. Kotilainen titta.kotilainen@helsinki.fi (ORCID) [contributor]
Details
Package 'photobiologyWavebands' provides constructors for objects of class
waveband from package 'photobiology'. These contructors are based on
standard definitions or frequently used non-standardized definitions. When
different definitions are in common use for a given named waveband the
constructors accept an argument to chose among them. Whenever an ISO standard
provides a definition, this is used by default. In the infrared (IR) there
are many different definitions and waveband names in use. We have tried to
include most of the commonly used names and definitions.
Definitions "matching" the different bands of Landsat imagers are included. These are simple wavelength ranges for wavelengths at half-maximun response as given in the NASA literature, which in some cases presents small inconsistencies. These definitions cannot exactly reproduce instrument responses as they do not describe the real spectral responsiveness of the satellite imagers.
By necessity we cover only a subset of all definitions in use. These should
be thought as convenience functions, as waveband objects according to any
arbitrary definition can be constructed with the constructor provided by
package photobiology-package.
References
Aphalo, Pedro J. (2015) The r4photobiology suite. UV4Plants Bulletin, 2015:1, 21-29. tools:::Rd_expr_doi("10.19232/uv4pb.2015.1.14").
Aphalo, P. J., Albert, A., Björn, L. O., McLeod, A. R., Robson, T. M., Rosenqvist, E. (Eds.). (2012). Beyond the Visible: A handbook of best practice in plant UV photobiology (1st ed., p. xxx + 174). Helsinki: University of Helsinki, Department of Biosciences, Division of Plant Biology. ISBN 978-952-10-8363-1 (PDF), 978-952-10-8362-4 (paperback). Open access PDF download available at https://hdl.handle.net/10138/37558
Caldwell, M. M. (1971) Solar UV irradiation and the growth and development of higher plants. In Giese, A. C. (Ed.) Photophysiology, Academic Press, 1971, 6, 131-177
Diffey, B. L. 1991. Solar ultraviolet radiation effects on biological systems. Review in Physics in Medicine and Biology 36 (3): 299-328.
Green, A. E. S., Miller, J. H. (1975) Measures of biologically active radiation in the 280-340 nm region. Impacts of climate change on the environment. CIAP Monograph, 5, Part 1, Chapter 2.2.4
Green, A. E. S.; Sawada, T. & Shettle, E. P. (1974) The middle ultraviolet reaching the ground Photochemistry and Photobiology, 1974, 19, 251-259
Ibdah, M., Krins, A., Seidlitz, H. K., Heller, W., Strack, D. & Vogt, T. (2002) Spectral dependence of flavonol and betacyanin accumulation in Mesembryanthemum crystallinum under enhanced ultraviolet radiation. Plant, Cell & Environment, 25, 1145-1154
International Commission on Non-Ionizing Radiation Protection (2004) ICNIRP Guidelines on Limits of Exposure to Ultraviolet Radiation of Wavelengths Between 180 nm and 400 nm (Incoherent Optical Radiation). Health Physics 87(2):171-186. https://www.icnirp.org/cms/upload/publications/ICNIRPUV2004.pdf
ISO (2007) Optics and photonics - Spectral bands. ISO Standard 20473:2007. ISO, Geneva.
ISO (2007) Space environment (natural and artificial) - Process for determining solar irradiances. ISO Standard 21348. ISO, Geneva.
Quaite, F. E., Sutherland, B. M., Sutherland, J. C. Action spectrum for DNA damage in alfalfa lowers predicted impact of ozone depletion. Nature, 1992, 358, 576-578
Leutner, B. and Horning, N. (2016). RStoolbox: Tools for Remote Sensing Data Analysis. R package version 0.1.6. https://CRAN.R-project.org/package=RStoolbox
Micheletti, M. I.; Piacentini, R. D. & Madronich, S. (2003) Sensitivity of Biologically Active UV Radiation to Stratospheric Ozone Changes: Effects of Action Spectrum Shape and Wavelength Range Photochemistry and Photobiology, 78, 456-461
Musil, C. F. (1995) Differential effects of elevated ultraviolet-B radiation on the photochemical and reproductive performances of dicotyledonous and monocotyledonous arid-environment ephemerals. Plant, Cell and Environment, 18, 844-854
Murakami, K., Aiga I. (1994) Red/Far-red photon flux ratio used as an index number for morphological control of plant growth under artificial lighting conditions. Proc. Int. Symp. Artificial Lighting, Acta Horticulturae, 418, ISHS 1997.
NASA (nd) Landsat 7 Science Data Users Handbook. https://landsat.gsfc.nasa.gov/wp-content/uploads/2016/08/Landsat7_Handbook.pdf Visited on 2016-12-26.
Sellaro, R., Crepy, M., Trupkin, S. A., Karayekov, E., Buchovsky, A. S., Rossi, C., & Casal, J. J. (2010). Cryptochrome as a sensor of the blue/green ratio of natural radiation in Arabidopsis. Plant physiology, 154(1), 401-409. tools:::Rd_expr_doi("10.1104/pp.110.160820")
Setlow, R. B. (1974) The Wavelengths in Sunlight Effective in Producing Skin Cancer: A Theoretical Analysis. Proceedings of the National Academy of Sciences, 71, 3363-3366
Smith, H. (1982) Light quality, photoperception and plant strategy. Annual Review of Plant Physiology, 33:481-518.
USGS (nd) Landsat 8 Science Data Users Handbook. https://www.usgs.gov/media/files/landsat-8-data-users-handbook. Visited on 2023-01-07.
Webb, A. R.; Slaper, H.; Koepke, P. & Schmalwieser, A. W. Know your standard: clarifying the CIE erythema action spectrum. Photochemistry and photobiology, 2011, 87, 483-486
See Also
Examples
Run this code
q_irrad(sun.spct, PAR()) # PAR photon irradiance
q_irrad(sun.spct, Blue("ISO")) # blue photon irradiance, ISO definition
q_irrad(sun.spct, Blue("Sellaro")) # blue photon irradiance, Sellaro et al.'s definition
e_irrad(sun.spct, VIS()) # VIS irradiance, ISO definition
q_irrad(sun.spct, VIS()) # VIS photon, ISO definition
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