configShow

Plot a tree, highlighting configurations of a given size.

Tools for calculating and viewing topological properties of phylogenetic trees.

Michelle Kendall

phyloTop

Calculating Topological Properties of Phylogenies

Caroline Colijn

Michael Boyd

configShow function

<dl><dt>tree</dt>
<dd>a tree of class <code>phylo4</code></dd>
<dt>configSize</dt>
<dd>an integer giving the configuration size of interest</dd>
<dt>mainCol</dt>
<dd>colour for branches which are not in configurations of the chosen size (default is black)</dd>
<dt>configCol</dt>
<dd>colour for branches which are in such configurations (default is red)</dd>
<dt>...</dt>
<dd>further arguments to be passed to plot.phylo</dd></dl>

Arguments

Michelle Kendall <a href="/link/michelle.louise.kendall%40gmail.com?package=phyloTop&version=2.1.2" data-mini-rdoc="phyloTop::michelle.louise.kendall@gmail.com">michelle.louise.kendall@gmail.com</a>
Michael Boyd <a href="/link/mboyd855%40gmail.com?package=phyloTop&version=2.1.2" data-mini-rdoc="phyloTop::mboyd855@gmail.com">mboyd855@gmail.com</a>

Author

Plot a tree highlighting configurations — configShow

<dl>

<dt>tree</dt>
<dd>a tree of class <code>phylo4</code></dd>


<dt>configSize</dt>
<dd>an integer giving the configuration size of interest</dd>


<dt>mainCol</dt>
<dd>colour for branches which are not in configurations of the chosen size (default is black)</dd>


<dt>configCol</dt>
<dd>colour for branches which are in such configurations (default is red)</dd>


<dt>...</dt>
<dd>further arguments to be passed to plot.phylo</dd>

</dl>

Michelle Kendall <a href='mailto:michelle.louise.kendall@gmail.com'>michelle.louise.kendall@gmail.com</a>
Michael Boyd <a href='mailto:mboyd855@gmail.com'>mboyd855@gmail.com</a>

configShow: Plot a tree highlighting configurations

Description

Usage

Value

Arguments

Author

Examples