phylobase (version 0.8.12)

phylobase.options: Set or return options of phylobase

Description

Provides a mean to control the validity of phylobase objects such as singletons, reticulated trees, polytomies, etc.

Usage

phylobase.options(...)

Value

A list with the updated values of the parameters. If arguments are provided, the returned list is invisible.

Arguments

...

a list may be given as the only argument, or any number of arguments may be in the name=value form, or no argument at all may be given. See the Value and Details sections for explanation.

Author

Francois Michonneau (adapted from the package sm)

Details

The parameter values set via a call to this function will remain in effect for the rest of the session, affecting the subsequent behavior of phylobase.

Examples

if (FALSE) {
phylobase.options(poly="fail")
# subsequent trees with polytomies will fail the validity check
}