phylobase (version 0.8.12)

phylobubbles: Bubble plots for phylo4d objects

Description

Plots either circles or squares corresponding to the magnitude of each cell of a phylo4d object.

Usage

phylobubbles(
  type = type,
  place.tip.label = "right",
  show.node.label = show.node.label,
  rot = 0,
  edge.color = edge.color,
  node.color = node.color,
  tip.color = tip.color,
  edge.width = edge.width,
  newpage = TRUE,
  ...,
  XXYY,
  square = FALSE,
  grid = TRUE
)

Arguments

type

the type of plot

place.tip.label

A string indicating whether labels should be plotted to the right or to the left of the bubble plot

show.node.label

A logical indicating whether internal node labels should be plotted

rot

The number of degrees that the plot should be rotated

edge.color

A vector of colors for the tree edge segments

node.color

A vector of colors for the coloring the nodes

tip.color

A vector of colors for the coloring the tip labels

edge.width

A vector of line widths for the tree edges

newpage

Logical to control whether the device is cleared before plotting, useful for adding plot inside other plots

...

Additional parameters passed to the bubble plotting functions

XXYY

The out put from the phyloXXYY function

square

Logical indicating whether the plot 'bubbles' should be squares

grid

A logical indicating whether a grey grid should be plotted behind the bubbles

Author

Peter Cowan

See Also

phyloXXYY, treePlot

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.