pruningwise.branching.times

Calculates the branching times, or ages, of all internal nodes in
 an ultrametric tree whose internal representation is in "pruningwise" order.

Provides functions for fitting phylogenetic linear models and phylogenetic generalized linear models. The computation uses an algorithm that is linear in the number of tips in the tree. The package also provides functions for simulating continuous or binary traits along the tree. Other tools include functions to test the adequacy of a population tree.

Lam Si Tung Ho

phylolm

Phylogenetic Linear Regression

Cecile Ane

Robert Lachlan

Kelsey Tarpinian

Rachel Feldman

Qing Yu

Wouter van der Bijl

Joan Maspons

Rutger Vos

Paul Bastide

pruningwise.branching.times function

<dl> <dt>phy</dt>
<dd>an ultrametric phylogenetic tree of type phylo with branch
 lengths, already in "pruningwise" order.</dd></dl>

Arguments

Author

Calculates internal node ages in
  an ultrametric "pruningwise" tree — pruningwise.branching.times

<dl>

 <dt>phy</dt>
<dd>an ultrametric phylogenetic tree of type phylo with branch
 lengths, already in "pruningwise" order.</dd>

</dl>

Calculates internal node ages in
  an ultrametric "pruningwise" tree

pruningwise.branching.times: Calculates internal node ages in an ultrametric "pruningwise" tree

Description

Usage

Value

Arguments

Author

See Also

Examples