phylopath (version 1.2.1)

Perform Phylogenetic Path Analysis

Description

A comprehensive and easy to use R implementation of confirmatory phylogenetic path analysis as described by Von Hardenberg and Gonzalez-Voyer (2012) .

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Version

Install

install.packages('phylopath')

Monthly Downloads

740

Version

1.2.1

License

GPL-3

Maintainer

Wouter van der Bijl

Last Published

March 18th, 2024

Functions in phylopath (1.2.1)

define_model_set

Define a model set.

average_DAGs

Perform model averaging on a list of DAGs.

best

Extract and estimate the best supported model from a phylogenetic path analysis.

cichlids_tree

Cichlid phylogeny.

phylo_path

Compare causal models in a phylogenetic context.

plot.DAG

Plot a directed acyclic graph.

coef_plot

Plot path coefficients and their confidence intervals or standard errors.

choice

Extract and estimate an arbitrary model from a phylogenetic path analysis.

cichlids

Cichlid traits and the evolution of cooperative breeding.

show_warnings

Print out warnings from a phylopath analysis.

DAG

Directed acyclic graphs (DAGs)

plot.fitted_DAG

Plot a directed acyclic graph with path coefficients.

red_list

Data on brain size, life history and vulnerability to extinction

plot_model_set

Plot several causal hypothesis at once.

red_list_tree

Mammalian phylogeny

average

Extract and average the best supported models from a phylogenetic path analysis.

rhino

Rhinogrades traits.

rhino_tree

Rhinogrades phylogeny.

est_DAG

Add standardized path coefficients to a DAG.