get_taxa_unique

(Required). <code><a href="/link/taxonomyTable-class?package=phyloseq&version=1.16.2" rd-options="" data-mini-rdoc="phyloseq::taxonomyTable-class">taxonomyTable-class</a></code>, or <code><a href="/link/phyloseq-class?package=phyloseq&version=1.16.2" rd-options="" data-mini-rdoc="phyloseq::phyloseq-class">phyloseq-class</a></code>.

physeq

(Optional). Character. The taxonomic rank to use. Must select
from the set indicated by <code>get_taxa_unique</code>. Default is
to take the first column of the <code>taxonomyTable</code> component.

taxonomic.rank

(Optional). Logical. Should the accessor stop with 
an error if the slot is empty (<code>NULL</code>)? Default <code>TRUE</code>.

errorIfNULL

This is a simple accessor function to make it more convenient to determine
the different taxa present for a particular taxonomic rank
in a given <code><a href="/link/phyloseq-class?package=phyloseq&version=1.16.2" rd-options="" data-mini-rdoc="phyloseq::phyloseq-class">phyloseq-class</a></code> object.

phyloseq provides a set of classes and tools
    to facilitate the import, storage, analysis, and
    graphical display of microbiome census data.

Paul McMurdie

phyloseq

Handling and analysis of high-throughput microbiome
    census data

get_taxa_unique function

(Required). <code><a href="taxonomyTable-class" rd-options="">taxonomyTable-class</a></code>, or <code><a href="phyloseq-class" rd-options="">phyloseq-class</a></code>.

This is a simple accessor function to make it more convenient to determine
the different taxa present for a particular taxonomic rank
in a given <code><a href="phyloseq-class" rd-options="">phyloseq-class</a></code> object.

get_taxa_unique: Get a unique vector of the observed taxa at a particular taxonomic rank

Description

Usage

Arguments

Value

See Also

Examples