import_mothur_groups

A character string indicating the location of the 
mothur-produced group file in which the sample-source of each sequence
is recorded. See 
<code>http://www.mothur.org/wiki/Make.group</code>

mothur_group_file

The data.frame object
returned by this function is not immediately useable by other phyloseq
functions, and must be first parsed in conjunction with a separate mothur
<code>"list"</code> file. This function is made accessible to phyloseq users
for troubleshooting and inspection, but the <code>link{import_mothur()}</code> function
is suggested if the goal is to import the OTU clustering results from mothur
into phyloseq. You will need both a group file and a list file for that end.

internal

phyloseq provides a set of classes and tools
    to facilitate the import, storage, analysis, and
    graphical display of microbiome census data.

import_mothur_groups: Parse mothur group file into a simple hash table.

Description

Usage

Arguments

Value

See Also