"group"
file. This function is made accessible to phyloseq users
for troubleshooting and inspection, but the link{import_mothur()}
function
is suggested if the goal is to import the OTU clustering results from mothur
into phyloseq.import_mothur_otulist(mothur_list_file, cutoff=NULL)
"unique"
),
that matches one of the cutoff-values used to produce the OTU clustering
results contained within the list-file created by mothur. The default
is to take the largest value among the cutoff values contained in the list
file. If only one cutoff is included in the file, it is taken and this
argument does not need to be specified. Note that the cluster()
function within the mothur package will often produce a list file
with multiple cutoff values, even if a specific cutoff is specified. It is
suggested that you check which cutoff values are available in a given list
file using the show_mothur_cutoffs
function.cutoff
.show_mothur_cutoffs
, import_mothur