phyloseq (version 1.16.2)

otu_table<-: Assign a new OTU Table to x

Description

Assign a new OTU Table to x

Usage

otu_table(x) <- value
## S3 method for class 'phyloseq,otu_table':
otu_table(x) <- value
## S3 method for class 'otu_table,otu_table':
otu_table(x) <- value
## S3 method for class 'phyloseq,phyloseq':
otu_table(x) <- value

Arguments

x

(Required). phyloseq-class

value

(Required). otu_table-class or phyloseq-class.

Examples

# data(GlobalPatterns)
# # An example of pruning to just the first 100 taxa in GlobalPatterns.
# ex2a <- prune_taxa(taxa_names(GlobalPatterns)[1:100], GlobalPatterns)
# # The following 3 lines produces an ex2b that is equal to ex2a
# ex2b <- GlobalPatterns
# OTU <- otu_table(GlobalPatterns)[1:100, ]
# otu_table(ex2b) <- OTU
# identical(ex2a, ex2b)
# print(ex2b)
# # Relace otu_table by implying the component in context.
# ex2c <- GlobalPatterns
# otu_table(ex2c) <- ex2b
# identical(ex2a, ex2c)