phyloseq (version 1.16.2)

phyloseq_to_metagenomeSeq: Convert phyloseq data to MetagenomeSeq MRexperiment object

Description

No testing is performed by this function. The phyloseq data is converted to the relevant MRexperiment-class object, which can then be tested in the zero-inflated mixture model framework (e.g. fitZig) in the metagenomeSeq package. See the http://joey711.github.io/phyloseq-extensions{phyloseq-extensions} tutorials for more details.

Usage

phyloseq_to_metagenomeSeq(physeq, ...)

Arguments

physeq

(Required). phyloseq-class.

...

(Optional). Additional named arguments passed to newMRexperiment. Most users will not need to pass any additional arguments here.

Value

• A MRexperiment-class object.

See Also

fitTimeSeries fitLogNormal fitZig MRtable MRfulltable

Examples

# Check out the vignette metagenomeSeq for more details.
 # vignette("metagenomeSeq")
 data(soilrep)
 phyloseq_to_metagenomeSeq(soilrep)