phyloseq (version 1.16.2)

taxa_names: Get species / taxa names.

Description

Get species / taxa names.

Usage

taxa_names(physeq)
## S3 method for class 'ANY':
taxa_names(physeq)
## S3 method for class 'phyloseq':
taxa_names(physeq)
## S3 method for class 'otu_table':
taxa_names(physeq)
## S3 method for class 'taxonomyTable':
taxa_names(physeq)
## S3 method for class 'sample_data':
taxa_names(physeq)
## S3 method for class 'phylo':
taxa_names(physeq)
## S3 method for class 'XStringSet':
taxa_names(physeq)

Arguments

physeq

phyloseq-class, otu_table-class, taxonomyTable-class, or phylo

Value

• A character vector of the names of the species in physeq.

See Also

ntaxa

Examples

#
data("esophagus")
tree <- phy_tree(esophagus)
OTU1 <- otu_table(esophagus)
taxa_names(tree)
taxa_names(OTU1)
physeq1 <- phyloseq(OTU1, tree)
taxa_names(physeq1)