matchTipsAndTraits

Check for constitency of rows and columns names between a matrix of traits values and phylo4d object.

A collection of tools to explore the phylogenetic signal in univariate and multivariate data. The package provides functions to plot traits data against a phylogenetic tree, different measures and tests for the phylogenetic signal, methods to describe where the signal is located and a phylogenetic clustering method.

Francois Keck

phylosignal

Exploring the Phylogenetic Signal in Continuous Traits

matchTipsAndTraits function

<dl><dt>x</dt>
<dd>a matrix of data.</dd>
<dt>p4d</dt>
<dd>a phylo4d object.</dd>
<dt>p4d.tips</dt>
<dd>tips labels (relevant if p4d is <code>NULL</code>).</dd>
<dt>p4d.traits</dt>
<dd>traits labels (relevant if p4d is <code>NULL</code>).</dd>
<dt>subset</dt>
<dd>a logical. Should the data matrix be subsetted using tips and traits labels.</dd></dl>

Arguments

Match matrix row/col names with phylo4d tips/traits — matchTipsAndTraits

<dl>

<dt>x</dt>
<dd>a matrix of data.</dd>


<dt>p4d</dt>
<dd>a phylo4d object.</dd>


<dt>p4d.tips</dt>
<dd>tips labels (relevant if p4d is <code>NULL</code>).</dd>


<dt>p4d.traits</dt>
<dd>traits labels (relevant if p4d is <code>NULL</code>).</dd>


<dt>subset</dt>
<dd>a logical. Should the data matrix be subsetted using tips and traits labels.</dd>

</dl>

matchTipsAndTraits: Match matrix row/col names with phylo4d tips/traits

Description

Usage

Value

Arguments