Uses seed sequence BLAST results and IDs to join clusters identified as sisters into single clusters. Resulting object is of joined clusters, merging is required to reformat the clusters for subsequent analysis.
clstrs_join(blast_res, seed_ids, all_clstrs, ps)Seed sequence BLAST results
Seed sequence IDs
List of all clusters
Parameters list, generated with parameters()
list of joined clusters
Other run-private: batcher,
blast_clstr, blast_filter,
blast_setup, blast_sqs,
blastcache_load,
blastcache_save, blastdb_gen,
blastn_run, cache_rm,
cache_setup, clade_select,
clstr2_calc, clstr_all,
clstr_direct, clstr_sqs,
clstr_subtree, clstrarc_gen,
clstrarc_join, clstrrec_gen,
clstrs_calc, clstrs_merge,
clstrs_renumber, clstrs_save,
cmdln, descendants_get,
download_obj_check, error,
hierarchic_download, info,
ncbicache_load,
ncbicache_save, obj_check,
obj_load, obj_save,
parameters_load,
parameters_setup, parent_get,
progress_init, progress_read,
progress_reset,
progress_save, rank_get,
safely_connect,
search_and_cache,
searchterm_gen, seeds_blast,
seq_download, seqarc_gen,
seqrec_augment,
seqrec_convert, seqrec_gen,
seqrec_get, sids_check,
sids_get, sids_load,
sids_save, sqs_count,
sqs_load, sqs_save,
stage_args_check, stages_run,
tax_download, taxdict_gen,
taxtree_gen, txids_get,
txnds_count, warn