phylotools (version 0.1.2)

add.mat: Add matrix to current matrix

Description

Concatenates second columns of matrix.

Usage

add.mat(mat1, mat2)

Arguments

mat1

A dataframe with 2 columns.

mat2

A dataframe with 2 columns.

Value

A matrix with first column the names of the sequences, the second column the concatenated sequences.

Details

This function could be used to concatenate the second column of the second matrix with the first matrix's second column according to each matrix's first column (as the names of the sequences ). The "?" will be added automatically.

References

Kress W., Erickson D., Jones F., Swenson N., Perez R., Sanjur O., Bermingham E., Plant DNA barcodes and community phylogeny of a tropical forest dynamics plot in Panama. Proceedings of the National Academy of Sciences of the United States of America. 2009 18621-18626

See Also

See Also supermat

Examples

## add.mat example ########
dir <- system.file("extdata", package = "phylotools")
setwd(dir)
rbcla <- read.phylip("rbcla.phy")
matk <- read.phylip("matK.phy" )
rbdat <- phy2dat(rbcla)
matdat <- phy2dat(matk)
add.mat(rbdat, matdat)