phylotools (version 0.1.2)

write.mat: Save supermatrix

Description

Save supermatrix to a phylip file

Usage

write.mat(supermat, file = NULL)

Arguments

supermat

Supermatrix as build by function supermat

file

File name to be specified

Value

Save supermatrix to phylip file.

Details

None

References

Kress W., Erickson D., Jones F., Swenson N., Perez R., Sanjur O., Bermingham E., Plant DNA barcodes and community phylogeny of a tropical forest dynamics plot in Panama. Proceedings of the National Academy of Sciences of the United States of America. 2009 18621-18626

See Also

supermat

Examples

dir <- system.file("extdata", package = "phylotools")
file.copy(from = dir, to = getwd())
## Supermatrix with "rbcla","matk","trnH-psbA"
supermat1 <- supermat(rbcl = "rbcla.phy", matk = "matK.phy", 
           trn = c("trn1.phy", "trn2.phy","trn3.phy","trn4.phy"))	   
write.mat(supermat1, "result1.phy")